neurolucida

A program to read Neurolucida XML files and convert them to SWC format.

  1. neurolucida
  2. Usage
  3. Documentation
    1. Options
  4. About this egg
    1. Author
    2. Version history
    3. License

Usage

neurolucida [options...] [input files ...]

Where input files are XML Neurolucida files.

Documentation

neurolucida is a program that reads Neurolucida XML files and converts them to SWC format.

Options

--forest-bounds[=RESOLUTION]
print the boundaries of the entire forest (default resolution is 10 points)
-d, --data-dir=DATA-DIR
set download directory (default is a randomly generated name in /tmp)
-k, --key=FIELD
extraction key
-f, --format=FORMAT
output format (SWC or ASC)

About this egg

Author

Ivan Raikov

Version history

1.8
added option --forest-bounds
1.4
Support for Neurolucida v4
1.0
Initial release

License

Copyright 2011-2012 Ivan Raikov and the Okinawa Institute of Science and Technology.

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or (at
your option) any later version.

This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
General Public License for more details.

A full copy of the GPL license can be found at
<http://www.gnu.org/licenses/>.